I, For one, would be surprised if she's not shocked when she found your daikimura, any people would be in shock initially ;). but, I think you should call her, or at least greet her at school on monday.
Since she stayed to watch the anime after she found your stuff, and I don't think explaining yourself like you're a guilty person who need her permission will help, just act natural.
Me, I never hide my hobbies, I read some doujinshi too, even loli ones, many of my friends know I have them, but it's like po... (
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